Comparative RNA-seq based transcriptome profiling of waterlogging response in cucumber hypocotyls reveals novel insights into the de novo adventitious root primordia initiation

Table 1 Mapping results of RNA sequencing reads of the cucumber ‘Zaoer-N’ and ‘Pepino’ 48 h after waterlogging (WL) treatment and relative non-waterlogged conditions (CK)

Sample ID	Total reads	Mapped reads	Uniquely mapped reads	Number of mapped genes
Pepino CK_1	33,225,482	29,848,764	28,965,262	19,723
Pepino CK_2	46,772,956	41,794,366	40,689,862	21,056
Pepino CK_3	37,596,070	33,665,760	32,653,010	19,991
Pepino WL_1	36,258,376	32,161,091	29,798,229	20,038
Pepino WL_2	36,982,414	32,480,793	30,615,432	20,052
Pepino WL_3	41,844,460	35,644,650	29,096,668	20,247
Zaoer-N CK_1	43,620,302	37,461,442	34,791,432	20,050
Zaoer-N CK_2	35,427,694	30,387,272	29,598,977	19,870
Zaoer-N CK_3	39,279,546	34,107,693	33,275,553	20,013
Zaoer-N WL_1	42,364,332	36,674,382	35,372,191	20,346
Zaoer-N WL_2	28,383,702	2,4680,987	23,953,530	19,918
Zaoer-N WL_3	36,077,522	31,208,030	30,126,104	20,145
Average	38,152,738	33,342,936	31,578,021	20,121

ISSN: 1471-2229