Table 1 List of MdHMs gene families in the apple genome
Gene Name | Gene Locusa | CDS/bp | Strand |
|---|---|---|---|
SDG gene family | |||
 MdSDG01 | MD00G1030500 | 1515 | + |
 MdSDG02 | MD00G1060700 | 2277 | + |
 MdSDG03 | MD00G1068300 | 2148 | + |
 MdSDG04 | MD00G1179500 | 1875 | – |
 MdSDG05 | MD01G1012000 | 1149 | + |
 MdSDG06 | MD01G1080200 | 3231 | – |
 MdSDG07 | MD01G1116500 | 1371 | – |
 MdSDG08 | MD01G1220300 | 3249 | – |
 MdSDG09 | MD01G1224300 | 1062 | – |
 MdSDG10 | MD02G1157000 | 4524 | – |
 MdSDG11 | MD02G1174900 | 478 | – |
 MdSDG12 | MD02G1195100 | 1212 | – |
 MdSDG13 | MD02G1265700 | 2253 | – |
 MdSDG14 | MD02G1267300 | 2070 | – |
 MdSDG15 | MD02G1278400 | 3564 | + |
 MdSDG16 | MD03G1258900 | 891 | – |
 MdSDG17 | MD03G1294100 | 2451 | + |
 MdSDG18 | MD04G1028500 | 1623 | – |
 MdSDG19 | MD04G1052400 | 3861 | + |
 MdSDG20 | MD04G1231900 | 1740 | – |
 MdSDG21 | MD05G1027900 | 2019 | + |
 MdSDG22 | MD05G1031300 | 781 | + |
 MdSDG23 | MD05G1244800 | 768 | + |
 MdSDG24 | MD07G1051900 | 2067 | + |
 MdSDG25 | MD07G1058000 | 1611 | + |
 MdSDG26 | MD07G1058100 | 1839 | – |
 MdSDG27 | MD07G1289800 | 3225 | + |
 MdSDG28 | MD08G1159600 | 6348 | + |
 MdSDG29 | MD09G1002600 | 2031 | + |
 MdSDG30 | MD09G1103200 | 7443 | + |
 MdSDG31 | MD09G1105100 | 1446 | + |
 MdSDG32 | MD09G1129500 | 1686 | – |
 MdSDG33 | MD10G1032900 | 3441 | + |
 MdSDG34 | MD10G1226200 | 1467 | + |
 MdSDG35 | MD11G1279700 | 3213 | – |
 MdSDG36 | MD12G1009500 | 1035 | – |
 MdSDG37 | MD12G1043600 | 429 | – |
 MdSDG38 | MD12G1052100 | 990 | + |
 MdSDG39 | MD12G1112200 | 2115 | – |
 MdSDG40 | MD12G1250000 | 753 | – |
 MdSDG41 | MD13G1020900 | 1437 | + |
 MdSDG42 | MD13G1069000 | 1635 | + |
 MdSDG43 | MD13G1130100 | 2043 | – |
 MdSDG44 | MD13G1134900 | 2019 | – |
 MdSDG45 | MD13G1224000 | 1893 | – |
 MdSDG46 | MD13G1279000 | 2406 | + |
 MdSDG47 | MD14G1101300 | 1524 | – |
 MdSDG48 | MD15G1130200 | 6231 | + |
 MdSDG49 | MD15G1133700 | 6369 | – |
 MdSDG50 | MD15G1141800 | 1167 | – |
 MdSDG51 | MD15G1271600 | 4518 | – |
 MdSDG52 | MD15G1285900 | 2793 | – |
 MdSDG53 | MD15G1338000 | 1146 | – |
 MdSDG54 | MD15G1356600 | 1443 | – |
 MdSDG55 | MD16G1019300 | 1452 | + |
 MdSDG56 | MD16G1067900 | 1476 | – |
 MdSDG57 | MD16G1130300 | 2013 | – |
 MdSDG58 | MD16G1130700 | 1242 | – |
 MdSDG59 | MD16G1228800 | 2043 | – |
 MdSDG60 | MD16G1258900 | 1473 | + |
 MdSDG61 | MD17G1006800 | 2161 | + |
 MdSDG62 | MD17G1091000 | 7386 | + |
 MdSDG63 | MD17G1118300 | 1493 | – |
 MdSDG64 | MD17G1287300 | 1446 | – |
PRMT gene family | |||
 MdPRMT01 | MD02G1037100 | 1152 | + |
 MdPRMT02 | MD08G1132700 | 1650 | + |
 MdPRMT03 | MD13G1168500 | 1638 | – |
 MdPRMT04 | MD15G1111800 | 726 | – |
 MdPRMT05 | MD15G1112100 | 1950 | – |
 MdPRMT06 | MD15G1112600 | 1266 | – |
 MdPRMT07 | MD15G1177300 | 1149 | + |
HDMA gene family | |||
 MdHDMA01 | MD00G1030000 | 2382 | + |
 MdHDMA02 | MD00G1041900 | 2361 | + |
 MdHDMA03 | MD00G1206800 | 1320 | + |
 MdHDMA04 | MD01G1103000 | 2712 | – |
 MdHDMA05 | MD03G1220300 | 2247 | – |
 MdHDMA06 | MD05G1067900 | 3012 | – |
 MdHDMA07 | MD05G1344100 | 1446 | – |
 MdHDMA08 | MD06G1137800 | 1692 | + |
 MdHDMA09 | MD08G1004400 | 2448 | + |
 MdHDMA10 | MD08G1017300 | 5703 | + |
 MdHDMA11 | MD10G1077800 | 3000 | – |
 MdHDMA12 | MD10G1320100 | 1497 | – |
 MdHDMA13 | MD14G1152600 | 1638 | + |
 MdHDMA14 | MD15G1003800 | 2448 | + |
 MdHDMA15 | MD15G1016200 | 5337 | + |
 MdHDMA16 | MD15G1018300 | 2355 | + |
JMJ gene family | |||
 MdJMJ01 | MD00G1097500 | 3129 | – |
 MdJMJ02 | MD00G1097600 | 564 | – |
 MdJMJ03 | MD01G1082300 | 3300 | – |
 MdJMJ04 | MD01G1106000 | 4812 | – |
 MdJMJ05 | MD01G1218500 | 4560 | + |
 MdJMJ06 | MD04G1202800 | 1803 | + |
 MdJMJ07 | MD04G1229800 | 3648 | – |
 MdJMJ08 | MD05G1326700 | 3075 | – |
 MdJMJ09 | MD05G1351300 | 2664 | – |
 MdJMJ10 | MD06G1012500 | 3141 | – |
 MdJMJ11 | MD06G1026100 | 2673 | + |
 MdJMJ12 | MD06G1159300 | 4404 | – |
 MdJMJ13 | MD06G1081900 | 5532 | – |
 MdJMJ14 | MD07G1099600 | 3702 | – |
 MdJMJ15 | MD07G1172400 | 4785 | – |
 MdJMJ16 | MD08G1186800 | 2946 | + |
 MdJMJ17 | MD10G1304800 | 3093 | – |
 MdJMJ18 | MD10G1182700 | 2658 | + |
 MdJMJ19 | MD10G1241100 | 3123 | – |
 MdJMJ20 | MD10G1325700 | 2070 | – |
 MdJMJ21 | MD12G1046300 | 1551 | – |
 MdJMJ22 | MD12G1216600 | 2841 | + |
 MdJMJ23 | MD12G1246900 | 3711 | – |
 MdJMJ24 | MD14G1103700 | 5529 | – |
 MdJMJ25 | MD14G1165600 | 4401 | – |
 MdJMJ26 | MD14G1175900 | 1425 | + |
 MdJMJ27 | MD15G1372700 | 2928 | + |
 MdJMJ28 | MD16G1280000 | 2667 | – |
HAG gene family | |||
 MdHAG01 | MD01G1105800 | 702 | – |
 MdHAG02 | MD01G1108300 | 885 | – |
 MdHAG03 | MD01G1237100 | 855 | + |
 MdHAG04 | MD02G1072700 | 1425 | – |
 MdHAG05 | MD02G1091000 | 867 | – |
 MdHAG06 | MD02G1183200 | 1251 | – |
 MdHAG07 | MD02G1187100 | 1872 | – |
 MdHAG08 | MD02G1300400 | 645 | – |
 MdHAG09 | MD02G1300500 | 663 | – |
 MdHAG10 | MD03G1064100 | 1173 | + |
 MdHAG11 | MD03G1263400 | 525 | + |
 MdHAG12 | MD04G1177300 | 282 | + |
 MdHAG13 | MD04G1217600 | 507 | + |
 MdHAG14 | MD05G1042000 | 303 | + |
 MdHAG15 | MD06G1040400 | 462 | – |
 MdHAG16 | MD06G1234100 | 810 | – |
 MdHAG17 | MD07G1016800 | 411 | – |
 MdHAG18 | MD07G1016300 | 411 | – |
 MdHAG19 | MD07G1023300 | 615 | + |
 MdHAG20 | MD07G1174400 | 891 | – |
 MdHAG21 | MD07G1238600 | 855 | – |
 MdHAG22 | MD07G1309700 | 852 | + |
 MdHAG23 | MD08G1142000 | 255 | – |
 MdHAG24 | MD09G1002300 | 632 | – |
 MdHAG25 | MD09G1120700 | 600 | – |
 MdHAG26 | MD09G1224900 | 1231 | + |
 MdHAG27 | MD09G1249800 | 492 | + |
 MdHAG28 | MD10G1193500 | 1653 | – |
 MdHAG29 | MD11G1067900 | 1179 | + |
 MdHAG30 | MD11G1284200 | 525 | + |
 MdHAG31 | MD12G1036200 | 297 | + |
 MdHAG32 | MD12G1192400 | 747 | + |
 MdHAG33 | MD12G1234800 | 582 | + |
 MdHAG34 | MD13G1053400 | 579 | + |
 MdHAG35 | MD13G1088000 | 1092 | + |
 MdHAG36 | MD13G1155300 | 1173 | + |
 MdHAG37 | MD13G1195500 | 666 | – |
 MdHAG38 | MD13G1195600 | 222 | + |
 MdHAG39 | MD14G1023000 | 462 | + |
 MdHAG40 | MD14G1163700 | 1695 | + |
 MdHAG41 | MD14G1240800 | 693 | – |
 MdHAG42 | MD15G1118400 | 489 | + |
 MdHAG43 | MD15G1202500 | 1425 | – |
 MdHAG44 | MD15G1217100 | 1023 | – |
 MdHAG45 | MD15G1295100 | 1251 | + |
 MdHAG46 | MD15G1298200 | 1860 | – |
 MdHAG47 | MD16G1088300 | 1035 | + |
 MdHAG48 | MD16G1196400 | 459 | + |
 MdHAG49 | MD16G1196500 | 561 | + |
 MdHAG50 | MD16G1262600 | 792 | – |
HAM gene family | |||
 MdHAM01 | MD08G1173300 | 1465 | + |
 MdHAM02 | MD15G1358600 | 1338 | + |
HAC gene family | |||
 MdHAC01 | MD09G1082800 | 3288 | + |
 MdHAC02 | MD09G1170000 | 5244 | – |
 MdHAC03 | MD17G1073200 | 4473 | + |
 MdHAC04 | MD17G1157200 | 2616 | + |
HAF gene family | |||
 MdHAF01 | MD04G1047300 | 5601 | + |
HDA gene family | |||
 MdHDA01 | MD01G1005700 | 1338 | – |
 MdHDA02 | MD03G1137300 | 1389 | + |
 MdHDA03 | MD03G1154900 | 1149 | – |
 MdHDA04 | MD04G1077800 | 387 | + |
 MdHDA05 | MD05G1146000 | 1488 | + |
 MdHDA06 | MD05G1147700 | 297 | + |
 MdHDA07 | MD05G1149000 | 1008 | + |
 MdHDA08 | MD06G1167500 | 1413 | + |
 MdHDA09 | MD06G1202300 | 2004 | + |
 MdHDA10 | MD06G1211800 | 1722 | – |
 MdHDA11 | MD08G1043300 | 1203 | + |
 MdHDA12 | MD10G1145400 | 1488 | + |
 MdHDA13 | MD11G1159400 | 1293 | + |
 MdHDA14 | MD14G1173000 | 1407 | + |
 MdHDA15 | MD14G1211400 | 2001 | + |
 MdHDA16 | MD14G1222300 | 1722 | – |
SRT gene family | |||
 MdSRT01 | MD00G1091800 | 1416 | + |
 MdSRT02 | MD03G1179400 | 1454 | + |
 MdSRT03 | MD11G1199100 | 1416 | + |
HDT gene family | |||
 MdHDT01 | MD03G1134300 | 624 | – |
 MdHDT02 | MD03G1134400 | 321 | – |
 MdHDT03 | MD11G1156500 | 594 | – |
 MdHDT04 | MD11G1156600 | 321 | – |
 MdHDT05 | MD12G1016900 | 521 | – |
 MdHDT06 | MD12G1017000 | 315 | – |
 MdHDT07 | MD14G1014900 | 642 | – |