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Fig. 6 | BMC Plant Biology

Fig. 6

From: A genome-wide association study using a Vietnamese landrace panel of rice (Oryza sativa) reveals new QTLs controlling panicle morphological traits

Fig. 6

Genome-wide association study of SpN, SBN and PBN traits in the full panel. From top to bottom, QQ plot, Manhattan plot over the 12 chromosomes, and Linkage Disequilibrium (LD) heatmap surrounding the peak in the 2014 experiment for spikelet number (SpN) with QTL_4 and QTL_9 on chromosome 1 and 2 respectively, secondary branch number (SBN) with QTL_9 on chromosome 2 and primary branch number (PBN) for QTL_5 and QTL_24 on chromosome 1 and 10 respectively. Arrows indicate the position of functionally characterized genes. Red and bold back lines on the LD heat maps delimit the LD block for the GWAS peak. The significant SNPs are labelled in blue in the LD heatmap

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BMC Plant Biology

ISSN: 1471-2229

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