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Table 1 Summary of sequencing, read processing, mapping, and differential expression analysis

From: HyPRP1 performs a role in negatively regulating cotton resistance to V. dahliae via the thickening of cell walls and ROS accumulation

Sample names & Replicates

Control-12 hpi (C12)

VIGS-12 hpi (V12)

C12–1

C12–2

V12–1

V12–2

Raw reads

60,758,592

56,364,572

59,201,676

63,092,290

Clean reads

60,228,094

55,741,348

58,628,694

62,384,322

Q20 (%)

96.12

96.11

96.13

96.20

Q30 (%)

92.44

92.49

92.46

92.58

GC content (%)

44.62

43.65

45.03

45.34

Total mapped

56,294,373 (93.47%)

51,961,420 (93.22%)

54,610,037 (93.15%)

58,335,113 (93.51%)

Uniquely mapped

48,617,647 (80.72%)

45,077,574 (80.87%)

46,702,784 (79.66%)

49,786,940 (79.81%)

Detected genes(RPKM≥1)

46,067

46,695

42,211

43,636

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BMC Plant Biology

ISSN: 1471-2229

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