Table 3 Multiple sequence alignment and the presence of isotype specific conserved nucleotide consensus sequence in chloroplast tRNA of monocot plant. Asteriks indicates no conserved sequence
From: Genomic and evolutionary aspects of chloroplast tRNA in monocot plants
tRNA Isotypes | AC arm | D-arm | D-loop | ANC arm | ANC loop | Variable region | Ψ-arm | Ψ-loop |
|---|---|---|---|---|---|---|---|---|
Alanine | G-G-G-G-A-U-A | G-C-U-C | A-G-U-U-G-G-U-A | C-C-G-C-U | C-U-U-G-C-A-A | A-U-G-U-C | A-G-C-G-G | U-U-C-G-A-G-U |
Arginine | G-x-G | G-x-U-C | G-x3-A | ******** | C-U-x3-A-A | U-G | G-G | U-U-C-x-A-x-U |
Asparagine | U-C-C-U-C-A-G | G-C-U-C | G-A-U-G-G-U-A | G-U-C-G-C | C-U-G-U-U-A-A | U-G-G-U-C | G-U-A-G-G | U-U-C-G-A-A-U |
Aspartate | G-G-G-A-U-U-G | G-U-U-C | A-A-U-U-G-G-U-C-A | C-C-G-C-C | C-U-G-U-C-A-A | A-A-G-C-U | G-C-G-G-G | U-U-C-G-A-G-C |
Cysteine | G-G-C-G-G-C-A | G-C-C | A-A-G-x-G-G-U-A-A | G-G-G-G-A | C-U-G-C-A-A-A | U-A-x-C | C-C-C-A-G | U-U-C-A-A-A-U |
Glutamate | G-C-C-C-C-x-A | G-U-C-U | A-G-U-G-G-U-U-C-A | U-C-U-C-U | C-U-U-U-C-A-A | C-A-G-C | G-G-G-G-A | U-U-C-G-A-C-U |
Glutamine | U-G-G-G-G-C-G | G-C-C | A-A-G-U-G-G-U-A-A | G-C-G-G-G | U-U-U-U-G-G-U | U-A-C-U-C | G-G-A-G-G | U-U-C-G-A-A-U |
Glycine | G-C-G-A-G-C-G | G-U-U | C-A-x-U-G-G-U-A-A | U-C-U-C-C | U-U-G-C-C-A-A | A-G-A-U-A | C-C-G-G-G | U-U-C-G-A-U-U |
Histidine | G-C-G-G-A-U-G | G-C-C | A-A-G-U-G-G-A-U-C-A-A | G-U-G-G-A | U-U-G-U-G-A-A | C-A-U-G-C | G-C-G-G-G | U-U-C-A-A-U-U |
Isoleucine | G-G-G-C-U-A-U | G-C-U-C | A-G-U-G-G-U-A | C-G-C-C-C | C-U-G-A-U-A-A | A-G-G-U-C | U-C-U-G-G | U-U-C-A-A-G-U |
Leucine | G-x5-A | G-x-G | A-A-U-x-G-U-A-G-A | ******* | C-U-x-A-x2-A | G-x1–5-U-x2-A-x3–5-U | G-G | U-U-C-x-A-G-U |
Lysine | G-G-G-U-U-G-C | A-C-U-C | A-A-U-G-G-U-A | U-C-G-G | C-U-U-U-U-A-A | C-U-A | ****** | U-U-C-G-A-G-U |
Methionine | G-C | ***** | U-x-G-x-U-A | ******* | x-U-C-A-U-A-x | U | G-G | U-U-C-x-A-U-C |
Phenylalanine | G-U-C-A-G-G-A | G-C-U-C | A-G-U-U-G-G-U-A | G-A-G-G-A | C-U-G-A-A-A-A | G-U-G-U-C | A-C-C-A-G | U-U-C-A-A-A-U |
Proline | A-G-G-G-A-U-G | G-C-G-C | A-G-C-U-U-G-G-U-A | U-U-U-G-U | U-U-U-G-G-G-U | A-U-G-U-C | A-C-A-G-G | U-U-C-A-A-A-U |
Serine | G-G-A-G-A-G-A | G-C-x-G | A-G-x-G-G-x3-A | G | C/U-U-G/U-x2-A | U-x-U-A-x4-U-x5–6-U-A-x-C | G-A-G-G-G | U-U-C-G-A-A-U |
Threonine | G-C-C-C-x2-U | C-U-C | A-G-x-G-G-U-x-A | G-C | x-U-x-G-U-A-A | G-U-C | A-U-C-G-G | U-U-C-A-A-A-U |
Tryptophan | G-C-G-C-U-C-U | G-U-U-C | A-G-U-U-x-G-G-U-A | C-G-G-G-U | C-U-C-C-A-A-A | A-U-G-U-C | G-U-A-G-G | U-U-C-A-A-A-U |
Tyrosine | G-G-G-U-C-G-A | C-C-C-G | A-G-x-G-G-U-U-A-U | A-C-G-G-A | C-U-G-U-A-A-A | U-G-A-C-x-A-U-x2-G-U-C-U-A-C | G-C-U-G-G | U-U-C-A-A-A-U |
Valine | A-G-G-G-x-U-A | C-U-C | A-G-x0–2-C-G-G-U-A | C-x-C | U-U-x-A-C-x-U | A-x-G-U-C | C-x-G | U-U-C-G-A-x-x |