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Table 2 Haplotypes of AVR-Pik loci in rice blast fungus in Yunnan, China

From: Novel haplotypes and networks of AVR-Pik alleles in Magnaporthe oryzae

Haplotype

No. of isolates

% of total

Variant locusa

136

139

143

200

233

234

AB498875 (AVR-Pik_D)

  

C

C

G

C

T

G

AB498876 (AVR-Pik_A)

  

A

G

A

.

.

.

AB498877(AVR-Pik_B)

  

A

G

A

.

.

A

AB498878 (AVR-Pik_C)

  

A

.

.

A

.

.

AB498879 (AVR-Pik_E)

  

A

.

.

.

.

.

H01

45

22.4

.

.

.

.

.

.

H02

46

22.9

A

G

A

.

.

.

H03

4

2

A

G

A

.

.

A

H04

11

5.5

A

.

.

A

.

.

H05

51

25.4

A

.

.

.

.

.

H06

4

2

A

.

A

.

.

.

H07

27

13.4

.

.

A

.

.

.

H08

4

2

A

.

A

A

.

.

H09

3

1.5

.

G

A

.

.

.

H10

6

3

A

G

A

.

A

.

  1. aIndicates the same as AB498875 (GenBank Accession No.). AB498875, AB498876, AB498877, AB498878 and AB498879 of AVR-Pik were obtained from GenBank and represent the five different alleles AVR-Pik_D, AVR-Pik_A, AVR-Pik_B, AVR-Pik_C, and AVR-Pik_E, respectively
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BMC Plant Biology

ISSN: 1471-2229

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