Table 6 Description of expected MTAs using original SNPs for agronomic traits of Iranian wheat accessions exposed to the rain-fed conditions
Row | Marker | sequence | Trait | Chromosome | Position (bp) | Molecular process | Biological process |
|---|---|---|---|---|---|---|---|
1 | rs63808 | TGCAGTTGAAGTCGCGGTGGATGACGGCGGGGGAGGTGTGCTCGTGCAGAAACTCCAGCGCGCG_49 | Spike weight | 1B | 457,750,965-457,756,510 | protein kinase activity ATP binding | protein phosphorylation |
2 | rs2237 | TGCAGAAGGGGACGCCTCGGAATCTACGGCAGAGGACCGCCTCAGCGGCCTTCCCGACGGCGTC_30 | Spike length | 1B | 26,855,662-26,857,170 | protein binding (F-box domain) | – |
3 | rs26577 | TGCAGCCTCCAATCGTGTACACACCTCCGTAAACAGATCTCGATTCTTCACTCCCTGTAGAGAG_5 | Thousand kernel weight | 2B | 134,240,300-134,249,722 | protein binding (Armadillo) Involved in membrane | – |
4 | rs15903 | TGCAGCAGAGAATAATAGATGGAGGGAGGGGTGGTGCAAGTATAGCACCCGAGATCGGAAGAGC_41 | Spike weight | 2B | 47,175,539-47,181,332 | ADP binding (NB-ARC) | – |
5 | rs46075 | TGCAGGCACGACCGCATGACCTTCTCGAACTTGGCGTCCTTGGCATGGGCGAGCGCAGACTCGA_25 | Peduncle length | 3B | 44,856,819-44,857,576 | enzyme inhibitor activity (Pectinesterase inhibitor domain) | negative regulation of catalytic activity |
6 | rs61706 | TGCAGTGGGTCGTCGGAGCATCCAATCAGATCTCCACTACACGAACGAGACTAGCAGCAAGAGG_43 | Thousand kernel weight | 3B | 783,413,489-783,414,580 | GTPase activity GTP binding (Small GTPase AND Small GTP-binding protein domain) | Â |
7 | rs25700 | TGCAGCCGCTCTTCGGCGGCTCTTGCATCGATGAGCTCGCGGGTGCGGGTAAGGGGCAAGTCGT_35 | Plant height | 5B | 513,646,921-513,649,139 | catalytic activity D-arabinono-1,4-lactone oxidase activity oxidoreductase activity flavin adenine dinucleotide binding FAD binding | oxidation-reduction process |
9 | rs57846 | TGCAGTCAGAGATGATCAAGTTAAGGTCGTCGAACCCGTCATGGCAGCCGCCGCCGAGATCGGA_17 | Seed number | 5B | 637,387,009-637,389,605 | protein binding (BTB/POZ domain) | Â |
10 | rs46504 | TGCAGGCATATGCTCGCCCCACATGTTCGTAGACAGGCTATCCTGCCGTTACGCATTGTGGTAC_30 | Grain filling period | 6B | 534,921,073-534,927,092 | guanyl-nucleotide exchange factor activity Rho guanyl-nucleotide exchange factor activity (PRONE domain AND protein binding | Â |
11 | rs30520 | TGCAGCGCGACCCCTCTGCTGGCGAGCTGGGTTGGCCCATATATGTCTGCTTATTTTATAAAAA_57 | Days to emergence | 6B | 532,043,561-532,045,921 | anaphase-promoting complex binding ubiquitin-protein transferase activator activity | positive regulation of ubiquitin protein ligase activity |
12 | rs51526 | TGCAGGGTACGTGAGTGATTAAACTGGCTGAGTTAATTGTGATCGGCATTTGATGGTTATGGCC_47 | Grain yield | 6B | 664,500,180-664,501,715 | – | asymmetric cell division |
13 | rs56337 | TGCAGTACCGCTCTTCCCGAGCTGGCACTACTGTTCCACCCGTCCAACGATCTGTTGGGGCATC_32 | Grain yield | 7A | 80,142,837-80,144,941 | galactoside 2-alpha-L-fucosyltransferase activity (Xyloglucan fucosyltransferase | fucosylation cell wall biogenesis |
14 | rs53016 | TGCAGGTCCCATGGCCTCTACCATAGTCGAACGGAGGTGGATGCGCTTTGAGGTGGATGCCTGA_35 | Grain filling period | 7B | 15,713,548-15,714,633 | DNA binding DNA-binding transcription factor activity (NA-binding domain superfamily, AP2/ERF domain) | regulation of transcription, DNA-templated |