ddRAD sequencing-based identification of inter-genepool SNPs and association analysis in Brassica juncea

BMC Plant Biology

Table 5 Summary of marker-trait associations using SNP markers

S. No.	Trait	Marker	Chromosome	p value	r²
1.	DTF	A01_1808370	A01	7.59E-15	0.52
2.	DTM	A01_1808370	A01	2.69E-13	0.48
3.	SL	A01_1808370	A01	1.04E-10	0.41
4.	DTF	A01_6850903	A01	2.82E-08	0.30
5.	DTM	A01_6850903	A01	4.20E-07	0.26
6.	DTF	A02_24062658	A02	2.96E-06	0.22
7.	DTM	A02_24062658	A02	7.58E-06	0.20
8.	SL	A03_20651981	A03	1.53E-09	0.38
9.	DTM	A03_20651981	A03	4.59E-07	0.28
10.	DTF	A03_20651981	A03	7.37E-07	0.29
11.	DTF	A03_8547652	A03	4.16E-14	0.49
12.	DTM	A03_8547652	A03	1.05E-12	0.46
13.	DTF	A04_17601178	A04	2.27E-07	0.35
14.	SL	A04_17601178	A04	3.62E-06	0.27
15.	DTF	A06_23478761	A06	6.03E-06	0.26
16.	SL	A06_23478761	A06	7.11E-06	0.26
17.	DTM	A06_6796237	A06	8.28E-16	0.54
18.	DTF	A06_6796237	A06	1.94E-15	0.54
19.	SL	A06_6796237	A06	4.05E-12	0.45
20.	DTF	A07_11271	A07	4.34E-06	0.26
21.	SL	A08_26316831	A08	9.60E-08	0.31
22.	DTF	A08_26316831	A08	1.31E-07	0.31
23.	DTM	A08_26316831	A08	5.01E-07	0.28
24.	DTF	B01_31415063	B01	5.26E-09	0.36
25.	DTM	B01_31415063	B01	3.40E-07	0.30
26.	SL	B01_31415063	B01	5.96E-06	0.25
27.	SPS	B02_1692560	B02	126E-07	0.89
28.	DTF	B02_14715231	B02	2.10E-07	0.30
29.	SL	B02_14715231	B02	6.71E-06	0.24
30.	DTF	B04_20687623	B04	4.02E-12	0.45
31.	DTM	B04_20687623	B04	1.30E-09	0.37
32.	SL	B04_20687623	B04	1.74E-06	0.27
33.	PH	B04_20687623	B04	7.18E-06	0.26
34.	DTF	B06_18644772	B06	1.22E-14	0.49
35.	DTM	B06_18644772	B06	2.79E-11	0.39
36.	SL	B06_18644772	B06	6.61E-08	0.28
37.	DTM	B06_9741730	B06	1.15E-18	0.60
38.	DTF	B06_9741730	B06	2.22E-16	0.56
39.	SL	B06_9741730	B06	8.93E-11	0.42
40.	SL	B08_189749	B08	1.29E-07	0.31
41.	DTF	B08_189749	B08	8.26E-07	0.28
42.	TSW	B08_189749	B08	1.83E-06	0.30
43.	DTF	B08_7286923	B08	5.76E-17	0.56
44.	DTM	B08_7286923	B08	4.71E-15	0.51
45.	SL	B08_7286923	B08	8.20E-09	0.34

ISSN: 1471-2229