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Table 2 Information of the 33 pitaya HpLRR transcriptional genes with CDSs > 1.0 kb

From: Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection

Unigene

Length

CDS

N -FPKM

D -FPKM

log2FoldChange(D/N)

Annotation (nr, SwissProt, KEGG, COG, InterPro, GO)

CL445.Contig4_All

3716

3417

0.49

1.77

1.85

NBS-LRR type resistance protein

Unigene28_All

3386

3006

0.88

3.82

2.13

Probable LRR receptor-like STK RFK1 isoform X1

CL28.Contig2_All

3487

2784

0.65

2.89

2.15

Probable LRR receptor-like STK At1g67720-like

Unigene2712_All

2825

2636

1.39

3.10

1.15

NBS-LRR type resistance protein

CL218.Contig5_All

4019

2529

0.62

0.82

0.42

NBS-LRR type resistance protein

CL218.Contig2_All

4089

2529

0.78

1.41

0.85

NBS-LRR type resistance protein

CL1599.Contig2_All

2057

1938

0.81

1.82

1.17

FBXL 10-like

CL1599.Contig1_All

2093

1938

0.26

0.64

1.29

FBXL 10-like

Unigene12546_All

2161

1815

0.47

2.1

2.16

Probable LRR receptor-like protein kinase At5g63930-like

CL332.Contig2_All

1749

1714

1.05

2.34

1.16

NBS-LRR type resistance protein

CL1165.Contig6_All

1953

1566

0.12

0.12

0.00

Probable LRR receptor-like STK At5g10290-like isoform X1

CL1260.Contig3_All

1971

1548

0.09

2.45

4.76

Probable LRR receptor-like STK At3g47570-like

Unigene4411_All

1802

1515

0.23

1.15

2.35

FBXL At5g63520-like

Unigene6828_All

2223

1506

0.79

1.7

1.11

PIRL 1-like

Unigene9555_All

1769

1449

0.87

1.56

0.85

Probable LRR receptor-like STK At1g06840-like

CL218.Contig3_All

2429

1428

0.48

0.64

0.43

NBS-LRR type resistance protein

Unigene8646_All

1712

1398

3.05

22.85

2.91

LRR receptor-like STK FLS2

CL9.Contig5_All

3183

1389

1.18

4.88

2.05

NBS-LRR gene cluster, complete sequence

CL1165.Contig3_All

2675

1281

0.33

1.15

1.80

Probable LRR receptor-like STK At5g10290-like isoform X1

CL332.Contig1_All

1245

1219

0.96

1.33

0.48

NBS-LRR type resistance protein

CL971.Contig1_All

1708

1203

0.05

0.71

3.97

Probable LRR receptor-like STK At5g45840-like

CL971.Contig2_All

1828

1203

0.48

0.50

0.04

Probable LRR receptor-like STK At5g45840-like

CL218.Contig4_All

2640

1194

0.82

1.70

1.05

NBS-LRR type resistance protein

Unigene8930_All

1465

1188

0.26

2.41

3.24

Probable LRR receptor-like STK At1g56130-like

Unigene7537_All

1389

1182

0.22

1.84

3.09

Probable LRR receptor-like STK At1g53430

CL6.Contig2_All

1344

1179

0.11

0.86

2.96

Probable LRR receptor-like STK At1g53430-like

Unigene19708_All

1682

1179

0.05

1.78

5.15

Putative LRR receptor-like STK

Unigene8268_All

1469

1167

0.74

0.76

0.04

Probable LRR receptor-like STK At4g36180

Unigene8383_All

1373

1113

0.25

1.03

2.07

Putative FBXL

Unigene11462_All

1447

1095

0.26

1.89

2.86

Probable LRR receptor-like STK At1g56140

CL1259.Contig3_All

1145

1091

1.09

4.54

2.06

NBS-LRR type resistance protein

CL1240.Contig2_All

1174

1049

0.10

0.68

2.75

Probable LRR receptor-like STK At1g06840 isoform X3

Unigene179_All

2179

1005

1.16

1.79

0.63

Probable LRR receptor-like STK At1g14390

  1. N -FPKM Fragments per kilobase of transcript per million mapped reads (FPKM) of normal samples (N); D -FPKM Fragments per kilobase of. transcript per million mapped reads (FPKM) of disease samples (D). FBXL F-box/LRR-repeat protein; LRR: leucine-rich repeat; NBS: nucleotide-binding site; PIRL Plant intracellular Ras group-related LRR; RLK Receptor-like kinase; STK Serine/threonine-protein kinase
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BMC Plant Biology

ISSN: 1471-2229

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