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Table 2 Effect of exogenous ABA on stress-related phasiRNA and target gene expression

From: Identification of tRFs and phasiRNAs in tomato (Solanum lycopersicum) and their responses to exogenous abscisic acid

phasiRNA ID

C1D

(RPM)

A1D

(RPM)

Target genes

(No.)

Expressed transcripts & the numbers

Sum

up-regulated

down-regulated

no changed

1_541_136(+)

41.03

24.16

NBS-LRR(2)

2

1

0

1

   

dSTK(2)

6

3

2

1

1_541_178(+)

539.81

439.36

RLK(1)

1

0

0

1

6_1497_500(−)

1628.21

1188.46

NBS-LRR(1)

4

1

0

3

   

STK(1)

1

1

0

0

   

RLK(3)

7

5

1

1

6_1500_369(−)

441.61

350.39

RLK(1)

1

0

0

1

11_1518_166(+)

1368.32

291.07

AP2/ERF(1)

1

1

0

0

   

bHLH(1)

2

1

0

1

   

GRAS(1)

2

0

0

2

   

WRKY(2)

3

3

0

0

   

DSTK(7)

12

5

3

4

   

ERLK(16)

27

12

2

13

11_1518_229(+)

72.79

37.35

AP2/ERF(3)

2

2

0

0

   

ERF(1)

–

   
   

MYB(3)

5

1

0

4

   

NAC(2)

1

0

0

1

   

NBS-LRR(1)

1

1

0

0

   

STK(3)

4

3

0

1

   

RLK(1)

2

1

1

0

11_1518_250(+)

2035.14

1398.8

ARF(1)

1

1

0

0

1_1364_205(−)

103.08

239.45

aARF(1)

1

0

0

1

   

bSTK(3)

4

2

0

2

1_1364_226(−)

25.4

64.8

aARF(1)

1

0

0

1

   

bSTK(3)

4

2

0

2

1_1364_249(+)

74.25

174.64

cMYB(1)

–

   

9_1750_102(+)

91.35

139.5

NBS-LRR(1)

2

1

1

0

   

RLK(1)

1

0

0

1

10_1305_229(+)

70.83

118.08

cMYB(1)

–

   

10_1305_418(+)

32.73

49.98

dSTK(1)

2

1

1

0

11_131_361(+)

42.99

63.16

NBS-LRR(6)

9

4

2

3

   

dSTK(4)

9

4

2

3

   

eRLK(2)

2

0

0

2

11_2273_1539(+)

20.52

33.5

NBS-LRR(2)

3

1

1

1

   

RLK(1)

1

1

0

0

  1. Note: the same letters a, b and c denote the same target gene; d these STK genes are included in the D7 STKs targeted by 11_1518_166(+); e these RLK genes are included in the E16 RLKs targeted by 11_1518_166(+)
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BMC Plant Biology

ISSN: 1471-2229

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