Screening and identification of miRNAs related to sexual differentiation of strobili in Ginkgo biloba by integration analysis of small RNA, RNA, and degradome sequencing

Liu, Xiao-Meng; Cheng, Shui-Yuan; Ye, Jia-Bao; Chen, Ze-Xiong; Liao, Yong-Ling; Zhang, Wei-Wei; Kim, Soo-Un; Xu, Feng

doi:10.1186/s12870-020-02598-8

Table 2 miRNAs and target genes involved in regulating the process of G. biloba strobilus development and sex differentiation

From: Screening and identification of miRNAs related to sexual differentiation of strobili in Ginkgo biloba by integration analysis of small RNA, RNA, and degradome sequencing

Metabolic pathway /Development	MB _vs_ FB				MS _vs_ OS
Metabolic pathway /Development	miRNAID	miR_regulate	mRNATar	Tar_regulate	miRNAID	miR_regulate	mRNATar	Tar_regulate
Flower development pathway	novel_miR_1881-5p	up	GIGANTEA	down	novel_miR_1858-3p	down	ATR	up
	novel_miR_2912-5p	down	POX53	up	novel_miR_2329-5p	down	AP2	up
					novel_miR_1944-5p	down	AP2	up
GA metabolic pathway	miR159.1-3p	up	GAMYB1	down	miR159.1-3p	up	GAMYB1	down
	miR159.1-3p	up	GAMYB2	down	miR159.1-3p	up	SRG1	down
	miR159.2-3p	up	GAMYB3	down	miR159.1-3p	up	GAMYB4	down
	miR159.2-3p	up	GAMYB4	down	miR159.2-3p	up	GAMYB4	down
	miR159.2-3p	up	GAMYB1	down	miR159.2-3p	up	GAMYB1	down
	miR159.3-3p	up	GAMYB4	down	miR159.3-3p	up	GAMYB4	down
	miR159.3-3p	up	GAMYB1	down	miR159.3-3p	up	GAMYB1	down
	miR159.4-3p	up	GAMYB4	down	miR159.4-3p	up	GAMYB4	down
	miR159.4-3p	up	GAMYB1	down	miR159.4-3p	up	GAMYB1	down
	miR858-3p	up	GAMYB1	down	miR858-3p	up	GAMYB1	down
	miR858-3p	up	GAMYB3	down	miR858-3p	up	GAMYB4	down
	miR858-3p	up	GAMYB4	down	novel_miR_2221-3p	up	GALMADRAFT	down
	miR319.1-3p	up	GAMYB3	down	novel_miR_3455-3p	up	GALMADRAFT	down
	miR319.2-3p	up	GAMYB3	down	novel_miR_1944-5p	down	PME13	up
	miR319.3-3p	up	GAMYB3	down	novel_miR_2329-5p	down	PME13	up
	novel_miR_1872-3p	up	ARHGAP7	down
ETH metabolic pathway	miR2950.1-3p	up	ERF2	down
ETH metabolic pathway	miR2950.1-5p	up	ERF2	down
IAA metabolic pathway					miR160.1-5p	up	ARF18.1	down
					miR160.1-5p	up	ARF18.2	down
					miR160.2-5p	up	ARF18.1	down
					miR160.2-5p	up	ARF18.2	down
					miR160.3-5p	up	ARF18.1	down
					miR160.3-5p	up	ARF18.2	down
					miR160.4-5p	up	ARF18.1	down
					miR160.4-5p	up	ARF18.2	down
					miR160.5-5p	up	ARF18.1	down
					miR160.5-5p	up	ARF18.2	down
					miR160.6-5p	up	ARF18.1	down
					miR160.6-5p	up	ARF18.2	down
CTK metabolic pathway					miR2950.3-5p	up	AHP5	down

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