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Table 2 Analysis of the protein composition of the FCPs and protein subunits of the PSII and PSI core complexes of the different AEC fractions by mass spectrometry. Before analysis by MS the proteins of the different fractions were separated by SDS-PAGE as depicted in Fig. 5. Table 2 lists only those proteins that were detected with a minimum of two polypeptides and a protein coverage larger than 1000. The complete protein composition of the different AEC fractions with respect to FCPs, PSI and PSII proteins can be found in the Additional file 6

From: Pre-purification of diatom pigment protein complexes provides insight into the heterogeneity of FCP complexes

Fraction number

FCP proteins

PS proteins

Fraction 1

Lhcx6_1

psbC

psbE

psbV

Fraction 2

Lhcf1

psbA

Lhcf2

psbB

Lhcf4

psbC

Lhcf5

psbD

Lhcf6

psbE

Lhcf7

psbV

Lhcf8

 

Lhcf9

psaD

 

psaF

Lhcx1

psaL

Lhcx2

 

Lhcx5

 

Lhcr3

 

Fraction 3

Lhcf1

psbA

Lhcf2

psbC

Lhcf4

psbD

Lhcf5

psbE

Lhcf6

psbV

Lhcf8

 

Lhcf9

psaD

 

psaF

Lhcr3

 

Lhcr14

 

Fraction 4

Lhcf1

psbC

Lhcf2

psbE

Lhcf4

 

Lhcf5

psaD

Lhcf6

psaF

Lhcf8

psaL

Lhcf9

 

Lhcr1

 

Lhcr3

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