Phylogenomic and evolutionary dynamics of inverted repeats across Angelica plastomes

Wang, Mengli; Wang, Xin; Sun, Jiahui; Wang, Yiheng; Ge, Yang; Dong, Wenpan; Yuan, Qingjun; Huang, Luqi

doi:10.1186/s12870-020-02801-w

BMC Plant Biology

Table 2 Comparison of the chloroplast genome features of Angelica species

From: Phylogenomic and evolutionary dynamics of inverted repeats across Angelica plastomes

ID	Species	CP genome type	Genome size (bp)	LSC size (bp)	SSC size (bp)	IR size (bp)	Genome GC	Total genes	Protein coding genes	rRNA genes	tRNA genes	Total genes uniq
DG001	A. morii	I	152,858	86,914	17,524	24,210	37.5%	129	85	8	36	113
DG025	A. anomala	II	147,145	93,695	17,820	17,815	37.5%	127	84	8	35	113
DG010	A. apaensis	II	147,021	93,693	17,770	17,779	37.5%	127	84	8	35	113
DG004	A. biserrata	II	146,677	93,217	17,500	17,980	37.5%	128	84	8	36	114
DG023	A. cartilaginomarginata	II	146,583	94,185	17,806	17,296	37.5%	128	84	8	36	114
DG003	A. cartilaginomarginata var. foliata	II	147,017	93,622	17,777	17,809	37.5%	127	84	8	35	113
DG017	A. dahurica cv. ‘Qibaizhi’	II	146,815	93,547	17,690	17,789	37.5%	127	84	8	35	113
DG019	A. dahurica cv. ‘Qibaizhi’	II	146,811	93,547	17,630	17,817	37.5%	127	84	8	35	113
KT963037	A. dahurica	II	146,918	93,605	17,677	17,818	37.5%	128	85	8	35	113
DG026	A. dahurica cv. ‘Hangbaizhi’	II	146,810	93,546	17,630	17,817	37.5%	127	84	8	35	113
DG027	A. dahurica cv. ‘Hangbaizhi’	II	146,835	93,571	17,630	17,817	37.5%	127	84	8	35	113
HG021	A. dahurica	II	147,477	93,584	18,259	17,817	37.5%	128	84	8	36	114
DG016	A. dahurica var. formosana	II	147,097	93,322	17,625	18,075	37.5%	127	84	8	35	113
DG008	A. decursiva	II	146,158	92,655	17,537	17,983	37.6%	128	84	8	36	114
DG009	A. kangdingensis	II	146,529	93,853	17,530	17,573	37.5%	128	84	8	36	114
DG013	A. laxifoliata	II	146,682	93,964	17,532	17,593	37.5%	127	84	8	35	113
DG011	A. maowenensis	II	146,882	94,105	17,433	17,672	37.4%	127	84	8	35	113
DG006	A. megaphylla	II	146,724	92,350	17,672	18,351	37.5%	127	84	8	35	113
DG020	A. nitida	II	146,789	93,081	17,506	18,101	37.4%	127	84	8	35	113
MF594405	A. nitida	II	146,512	103,161	21,794	5836	37.5%	127	84	8	35	113
DG014	A. omeiensis	II	147,814	93,787	17,635	18,196	37.6%	128	85	8	35	113
DG005	A. polymorpha	II	146,982	93,442	17,754	17,893	37.6%	127	84	8	35	113
DG018	A. porphyrocaulis	II	146,859	93,543	17,682	17,817	37.5%	128	84	8	36	114
DG012	A. pseudoselinum	II	148,942	91,035	17,527	20,190	37.5%	128	85	8	35	113
DG002	A. tianmuensis	II	147,308	93,239	17,637	18,216	37.5%	127	84	8	35	113
DG007	A. valida	II	146,833	94,103	17,530	17,600	37.5%	127	84	8	35	113
KT963036	A. acutiloba	II	147,074	93,368	17,574	18,066	37.5%	128	85	8	35	113
KX352468	A. acutiloba	II	147,074	93,368	17,574	18,066	37.5%	128	85	8	35	113
HG022	A. gigas	III	146,916	93,163	17,579	18,087	37.6%	127	84	8	35	113
KT963038	A. gigas	III	146,916	93,119	17,583	18,107	37.6%	128	85	8	35	113
DG028	A. sinensis	IV	140,694	101,695	17,591	10,704	37.4%	121	80	8	33	113
DG029	A. sinensis	IV	140,670	101,680	17,578	10,706	37.5%	121	80	8	33	113
DG015	A. tsinlingensis	V	163,618	76,657	17,549	34,706	37.5%	144	99	8	37	114

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ISSN: 1471-2229

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