Table 1 LEA genes in the linseed flax genome and their sequence characteristics and physicochemical parameters
Code | gene ID | subfamily | chromosome | start position | end position | gene length | amino acid number | molecular weight | pI | GRAVY (Grand average of hydropathicity) |
|---|---|---|---|---|---|---|---|---|---|---|
LuLEA1 | Lus10016273 | LEA_1 | 1 | 8,834,131 | 8,834,846 | 716 | 171 | 17,497.09 | 8.02 | −0.878 |
LuLEA2 | Lus10016266 | LEA_1 | 1 | 8,852,939 | 8,853,333 | 395 | 95 | 9972.04 | 9.26 | −0.971 |
LuLEA3 | Lus10004182 | LEA_1 | 6 | 15,603,142 | 15,603,898 | 757 | 192 | 19,522.54 | 8.07 | −0.675 |
LuLEA4 | Lus10012018 | LEA_1 | 1 | 5,275,588 | 5,276,273 | 686 | 163 | 16,805.51 | 8.83 | −0.868 |
LuLEA5 | Lus10012009 | LEA_1 | 1 | 5,291,874 | 5,292,273 | 400 | 94 | 9955.05 | 9.26 | −0.989 |
LuLEA6 | Lus10030959 | LEA_1 | 9 | 5,737,361 | 5,737,983 | 623 | 180 | 19,210.83 | 9.59 | −0.326 |
LuLEA7 | Lus10043356 | LEA_1 | 12 | 18,006,089 | 18,006,485 | 397 | 101 | 10,984.61 | 9.64 | −0.974 |
LuLEA8 | Lus10040088 | LEA_1 | 7 | 4,983,805 | 4,984,203 | 399 | 105 | 11,585.3 | 10 | −0.585 |
LuLEA9 | Lus10021044 | LEA_1 | 8 | 5,446,756 | 5,447,674 | 919 | 275 | 28,147.83 | 9.25 | −0.785 |
LuLEA10 | Lus10007905 | LEA_2 | 15 | 15,218,505 | 15,218,906 | 402 | 133 | 14,348.51 | 5.03 | 0.067 |
LuLEA11 | Lus10010140 | LEA_2 | 1 | 27,748,453 | 27,748,974 | 522 | 173 | 18,824.58 | 6.91 | −0.191 |
LuLEA12 | Lus10010139 | LEA_2 | 1 | 27,744,603 | 27,745,160 | 558 | 158 | 17,017.53 | 4.84 | 0.089 |
LuLEA13 | Lus10019367 | LEA_2 | 3 | 9,280,916 | 9,281,338 | 423 | 140 | 15,636.12 | 5.37 | 0.039 |
LuLEA14 | Lus10036402 | LEA_2 | 11 | 7,987,612 | 7,988,013 | 402 | 133 | 14,338.52 | 5.03 | 0.063 |
LuLEA15 | Lus10008337 | LEA_2 | 14 | 10,638,391 | 10,639,780 | 1390 | 360 | 40,100.87 | 4.82 | −0.255 |
LuLEA16 | Lus10001869 | LEA_2 | 1 | 27,744,604 | 27,745,160 | 557 | 158 | 17,087.67 | 4.97 | 0.098 |
LuLEA17 | Lus10001876 | LEA_2 | scaffold78 | 62,191 | 76,313 | 14,123 | 449 | 49,626.94 | 5.26 | −0.381 |
LuLEA18 | Lus10006508 | LEA_3 | 12 | 6,574,065 | 6,574,454 | 390 | 93 | 9671.89 | 8.04 | −0.315 |
LuLEA19 | Lus10029634 | LEA_3 | 9 | 18,092,448 | 18,092,717 | 270 | 89 | 9562.94 | 9.99 | −0.288 |
LuLEA20 | Lus10037497 | LEA_3 | 3 | 25,716,318 | 25,716,712 | 395 | 109 | 11,650.1 | 9.25 | −0.472 |
LuLEA21 | Lus10008169 | LEA_3 | 14 | 10,147,208 | 10,147,453 | 246 | 81 | 8669.03 | 10 | −0.249 |
LuLEA22 | Lus10008170 | LEA_3 | 14 | 10,143,342 | 10,143,614 | 273 | 90 | 9411.64 | 9.99 | −0.301 |
LuLEA23 | Lus10027986 | LEA_3 | 1 | 25,394,304 | 25,394,585 | 282 | 93 | 9850.21 | 9.8 | −0.171 |
LuLEA24 | Lus10027987 | LEA_3 | 1 | 25,391,291 | 25,391,542 | 252 | 83 | 8817.13 | 10.08 | −0.293 |
LuLEA25 | Lus10042672 | LEA_3 | 10 | 13,440,188 | 13,440,457 | 270 | 89 | 9725.22 | 10.13 | −0.345 |
LuLEA26 | Lus10035586 | LEA_4 | 1 | 8,052,046 | 8,053,330 | 1285 | 398 | 43,529.02 | 5.56 | −1.120 |
LuLEA27 | Lus10008638 | LEA_4 | 1 | 4,084,499 | 4,086,081 | 1583 | 497 | 54,396.05 | 5.57 | −1.166 |
LuLEA28 | Lus10005044 | LEA_5 | 1 | 8,624,064 | 8,624,477 | 414 | 113 | 12,262.34 | 5.78 | −1.393 |
LuLEA29 | Lus10030394 | LEA_5 | 4 | 1,363,184 | 1,363,542 | 359 | 92 | 9929.79 | 6.61 | −1.424 |
LuLEA30 | Lus10027816 | LEA_5 | 1 | 4,694,779 | 4,695,196 | 418 | 113 | 12,262.34 | 5.78 | −1.393 |
LuLEA31 | Lus10037844 | LEA_5 | 15 | 14,416,820 | 14,417,098 | 279 | 92 | 9907.74 | 5.59 | −1.427 |
LuLEA32 | Lus10000125 | LEA_5 | 1 | 4,694,779 | 4,694,943 | 165 | 54 | 5909.46 | 5.32 | −1.339 |
LuLEA33 | Lus10029709 | LEA_6 | 5 | 1,264,925 | 1,265,191 | 267 | 88 | 9269.16 | 5.09 | −1.016 |
LuLEA34 | Lus10042745 | LEA_6 | 10 | 13,884,863 | 13,885,135 | 273 | 90 | 9526.45 | 5.13 | −1.076 |
LuLEA35 | Lus10017977 | Dehydrin | 14 | 16,763,128 | 16,764,061 | 934 | 217 | 22,733.12 | 6.1 | −0.812 |
LuLEA36 | Lus10003340 | Dehydrin | 14 | 4,685,613 | 4,686,676 | 1064 | 178 | 19,706.95 | 5.3 | −1.212 |
LuLEA37 | Lus10041969 | Dehydrin | 11 | 2,850,938 | 2,851,697 | 760 | 218 | 23,017.47 | 5.94 | −0.750 |
LuLEA38 | Lus10005652 | Dehydrin | 8 | 690,871 | 691,579 | 709 | 201 | 22,112.42 | 5.85 | −1.309 |
LuLEA39 | Lus10021827 | Dehydrin | 2 | 19,108,891 | 19,109,681 | 791 | 225 | 24,978.48 | 5.21 | −1.381 |
LuLEA40 | Lus10034568 | Dehydrin | 13 | 13,731,116 | 13,731,893 | 778 | 229 | 25,306.88 | 5.48 | −1.365 |
LuLEA41 | Lus10014280 | Dehydrin | 2 | 3,310,261 | 3,310,809 | 549 | 154 | 16,240.58 | 9.07 | −1.207 |
LuLEA42 | Lus10025983 | Dehydrin | 13 | 3,173,711 | 3,174,236 | 526 | 146 | 15,485.83 | 9.05 | −1.222 |
LuLEA43 | Lus10021240 | Dehydrin | 6 | 15,878,896 | 15,879,638 | 743 | 215 | 23,562.05 | 6.03 | −1.351 |
LuLEA44 | Lus10022643 | Dehydrin | 1 | 10,316,073 | 10,317,141 | 1069 | 179 | 19,861.18 | 5.47 | −1.226 |
LuLEA45 | Lus10015948 | SMP | 14 | 10,954,195 | 10,955,467 | 1273 | 204 | 21,225.88 | 6.83 | −0.311 |
LuLEA46 | Lus10019001 | SMP | 3 | 15,348,416 | 15,350,123 | 1708 | 261 | 26,890.83 | 4.92 | −0.336 |
LuLEA47 | Lus10010553 | SMP | 8 | 21,761,528 | 21,762,395 | 868 | 259 | 26,464.46 | 4.87 | −0.248 |
LuLEA48 | Lus10022058 | SMP | 9 | 16,956,079 | 16,956,709 | 631 | 122 | 12,369.7 | 4.69 | −0.234 |
LuLEA49 | Lus10006121 | SMP | 8 | 13,816,075 | 13,816,961 | 887 | 264 | 27,082.12 | 4.76 | −0.247 |
LuLEA50 | Lus10042604 | SMP | 9 | 16,956,079 | 16,957,417 | 1339 | 263 | 26,484.21 | 4.68 | −0.316 |