Fig. 2From: Combining QTL-seq and linkage mapping to fine map a candidate gene in qCTS6 for cold tolerance at the seedling stage in riceQTL analysis of CTS using QTL-seq. A Manhattan plot showing the distribution of Δ(SNP-index) on chromosomes, B the distribution of the square of the ED on the chromosomes, C the distribution of G-value on the chromosomes, and D the distribution of −log10(P-value) on the chromosomes based on Fisher’s exact test. The blue and red lines represent 95 and 99% CIs, respectively. The black lines are average values of the four algorithms and were drawn by sliding window analysis. The number on the horizontal coordinate represents the chromosome numberBack to article page