Table 2 Homozygous mutations located in chromosome 0 and chromosome III detected in C416 genome by re-sequencinga
Chr | Position | Reference | Alteration | Type | ID | Function annotation |
|---|---|---|---|---|---|---|
0 | 5,211,768 | T | A | SBS | CUFF.738 | Zinc finger CCCH domain-containing protein |
0 | 18,170,144 | A | T | SBS | CUFF.2453 | Cytochrome P450 94A1-like |
0 | 48,986,237 | G | A | SBS | CUFF.6544 | Chloroplast-targeted copper chaperone protein |
0 | 116,649,426 | T | C | SBS | CUFF.14705 | TashAT2 |
0 | 125,393,533 | G | A | SBS | CUFF.15787 | F-box |
0 | 146,760,633 | G | A | SBS | CUFF.18858 | F-box/FBD/LRR-repeat protein At5g56420-like |
0 | 149,463,384 | G | -15b | Deletion | CUFF.19232 | Cysteine proteinase precursor |
0 | 157,428,073 | A | T | SBS | CUFF.20352 | Probable protein phosphatase 2C 60-like isoform X1 |
0 | 174,990,604 | T | C | SBS | CUFF.22836 | EMB1273 |
3 | 4,271,744 | T | G | SBS | CUFF.40793 | TMV resistance protein N-like |
3 | 38,052,958 | T | +TTC | Insertion | CUFF.45186 | DNA ligase |
3 | 4,982,946 | T | C | SBS | CUFF.40834 | Signal transduction response regulator |