Table 3 Marker-trait-associated SNPs with climate factors
Trait | chromosome | Position | P value | -log10P | Allele | Count | MAF |
|---|---|---|---|---|---|---|---|
Altitude | NW_019268527.1 | 1,819,951 | 6.93E-06 | 5.16 | T/C | T:185_C:28 | 0.13 |
Altitude | NW_019268531.1 | 2,314,442 | 3.67E-06 | 5.44 | C/A | C:194_A:26 | 0.12 |
Annual average temperature | NW_019268531.1 | 2,389,878 | 5.16E-07 | 6.29 | G/T | G:38_T:175 | 0.18 |
Annual average temperature | NW_019268517.1 | 10,717,495 | 7.94E-06 | 5.1 | C/T | C:173_T:23 | 0.12 |
Annual precipitation | NW_019268528.1 | 3,116,384 | 4.25E-07 | 6.37 | A/G | A:141_G:75 | 0.35 |
Duration of annual sunshine | NW_019268521.1 | 5,309,956 | 1.58E-08 | 7.8 | T/G | T:183_G:40 | 0.18 |
Duration of annual sunshine | NW_019268534.1 | 1,535,409 | 5.02E-06 | 5.3 | A/T | A:64_T:155 | 0.29 |
Duration of annual sunshine | NW_019268528.1 | 3,065,008 | 4.70E-08 | 7.33 | C/A | C:137_A:76 | 0.36 |
Duration of annual sunshine | NW_019268528.1 | 3,083,925 | 5.18E-06 | 5.29 | G/C | G:170_C:51 | 0.23 |
Duration of annual sunshine | NW_019268528.1 | 3,086,479 | 7.96E-06 | 5.1 | A/G | A:48_G:120 | 0.22 |
Duration of annual sunshine | NW_019268528.1 | 3,089,068 | 4.59E-06 | 5.34 | G/A | G:173_A:49 | 0.22 |
Duration of annual sunshine | NW_019268528.1 | 3,095,958 | 7.89E-06 | 5.1 | C/A | C:166_A:45 | 0.21 |
Duration of annual sunshine | NW_019268528.1 | 3,101,942 | 6.25E-06 | 5.2 | T/G | T:47_G:167 | 0.22 |
Frost-free days | NW_019268532.1 | 1,633,356 | 9.68E-06 | 5.01 | C/T | C:21_T:186 | 0.1 |
Frost-free days | NW_019268532.1 | 1,641,919 | 3.38E-06 | 5.47 | G/A | G:38_A:181 | 0.17 |