Fig. 7

The proteins co-expressed analysis for DEGs co-network in WT vs N2 seeds (3DAPs). a In the RNA-seq of N2 vs WT seeds, all the pro-pro interactions representing the DEGs expressed in three co-networks. There are 99 proteins of DEGs involved in the co-network construction and only 72 proteins of them involved in the interaction, and this figure was constructed cytoscape 3.9.1. There are three groups of proteins labeled into red, green and yellow respectively with Score_threshold > 900, which are significantly co-expressed. b The heatmap (lg FPKM) are in accordance with DEGs expression in 3 groups of proteins which significantly co-expressed in seeds N2 vs WT, but SSI (LOC_Os06g06560) is not listed in the DEGs of the RNA-seq KEGG (Table S11)