Table 1 Results of the genome-wide association analysis for the S isolate of Puccinia recondita f. sp. secalis
Marker type | Chromosome | No of markers | No (%) of markers associated with immune response to LR | |||||
|---|---|---|---|---|---|---|---|---|
Total | Significant at 0.001 > p ≤ 0.05* | Significant at p ≤ 0.001** | ||||||
10 dpi | 17 dpi | 10 dpi | 17 dpi | 10 dpi | 17 dpi | |||
SNP-DArT | 0R | 2034 | 352 (17.31) | 352 (17.31) | 7 (0.34) | 5 (025) | 1 (0.05) | 0 (0.00) |
1R | 4179 | 892 (21.34) | 891 (21.32) | 216 (5.17) | 221 (5.29) | 107 (2.56) | 115 (2.75) | |
2R | 4722 | 1047 (22.17) | 1047 (22.17) | 17 (0.36) | 19(0.40) | 2 (0.04) | 2 (0.04) | |
3R | 4193 | 828 (19.75) | 829 (19.77) | 9 (0.21) | 11 (0.26) | 1 (0.02) | 0 (0.00) | |
4R | 4927 | 959 (19.46) | 959 (19.46) | 5 (0.10) | 11 (0.22) | 1 (0.02) | 0 (0.00) | |
5R | 4733 | 1046 (22.10) | 1047 (22.12) | 28 (0.59) | 26 (0.55) | 1 (0.02) | 0 (0.00) | |
6R | 4691 | 914 (19.48) | 911 (19.92) | 12 (0.26) | 12 (0.26) | 0 (0.00) | 0 (0.00) | |
7R | 4437 | 1012 (22.81) | 1013 (22.83) | 14 (0.32) | 14 (0.32) | 0 (0.00) | 0 (0.00) | |
NA | 8857 | 1572 (17.75) | 1559 (17.60) | 57 (0.64) | 54 (0.61) | 16 (0.18) | 23 (0.26) | |
Σ | 42,773 | 8622 (20.16) | 8608 (20.12) | 365 (0.85) | 373 (0.87) | 129 (0.30) | 140 (0.33) | |
silico-DArT | 0R | 4040 | 1923 (47.60) | 1920 (47.52) | 33 (0.82) | 40 (0.99) | 12 (0.30) | 8 (0.20) |
1R | 7015 | 3554 (50.66) | 3558 (50.72) | 1010 (14.40) | 911 (12.99) | 552 (7.87) | 519 (7.40) | |
2R | 8422 | 3987 (47.34) | 3984 (47.30) | 41 (0.49) | 58 (0.69) | 9 (0.11) | 9 (0.11) | |
3R | 7285 | 3097 (42.51) | 3095 (42.48) | 53 (0.73) | 65 (0.89) | 4 (0.05) | 7 (0.10) | |
4R | 9035 | 4295 (47.54) | 4291 (47.49) | 74 (0.82) | 68 (0.75) | 8 (0.09) | 8 (0.09) | |
5R | 8536 | 4024 (47.14) | 4018 (47.07) | 116 (1.36) | 77 (0.90) | 5 (0.06) | 7 (0.08) | |
6R | 8469 | 3865 (45.64) | 3864 (45.63) | 33 (0.39) | 40 (0.47) | 6 (0.07) | 5 (0.06) | |
7R | 7673 | 3795 (49.46) | 3794 (49.45) | 45 (0.59) | 72 (0.94) | 8 (0.10) | 6 (0.08) | |
NA | 45,391 | 14,847 (32.71) | 14,873 (32.77) | 536 (1.18) | 545 (1.20) | 163 (0.36) | 207 (0.46) | |
Σ | 105,866 | 43,387 (40.98) | 43,397 (40.99) | 1941 (1.83) | 1876 (1.77) | 767 (0.72) | 776 (0.73) | |