Table 3 Markers occupying identical chromosomal positions at both time points: 10 and 17 dpi. Table presents “common 21 pool” of significant SNP-DArT and silico-DArT markers that shared common chromosomal positions for two time points.*) First, reference allele; second, SNP allele. **) Marker genotype in LR-resistant lines (VAA ≥ 5; Table S1) and LR-susceptible lines (VAA ≤ 2.65; Table S1)
Marker position/QTL | Gene ID | Encoded protein | Location | p-value | SNP-DArT marker* | Marker genotype res/sus** | |||
|---|---|---|---|---|---|---|---|---|---|
s_SNP-DArTs, S_10 | s_SNP-DArTs, S_17 | s_silico-DArTs, S_10 | s_silico-DArTs, S_17 | ||||||
82,476,223/I | SECCE1Rv1G0011790.1 | GDSL esterase/lipase | exon (1/2) | 6.912 | 6.347 | 12.525 | 10.247 | 7467766|F|0–6:T > G | GG/TT |
82,803,484/I | SECCE1Rv1G0011840.1 | protein phosphatase 2C-like protein | intron (1/3) | 7.855 | 6.010 | 15.311 | 10.476 | 3730018|F|0–57:A > G | AA/GG |
82,809,999/I | SECCE1Rv1G0011850.1 | RNA polymerase II subunit B1 CTD phosphatase RPAP2 | exon (1/6) | 8.903 | 7.409 | 16.432 | 11.444 | 3362858|F|0–20:G > C | CC/GG |
86,006,833/I | SECCE1Rv1G0012070.1 | dehydrogenase | exon (2/3) | 6.978 | 6.384 | 11.419 | 4.036 | 5203314|F|0–14:C > T | CC/TT |
86,566,724/I | SECCE1Rv1G0012110.1 | peptide chain release factor 1 | exon (1/2) | 9.003 | 7.953 | 15.849 | 11.601 | 3603211|F|0–20:C > G | CC/GG |
93,659,576/I | SECCE1Rv1G0012540.1 | lecithin-cholesterol acyltransferase-like 1 | exon (1/1) | 7.899 | 6.349 | 16.657 | 13.489 | 3597912|F|0–20:C > T | CC/TT |
99,955,159/I | SECCE1Rv1G0013000.1 | DNA repair helicase | exon (11/11) | 4.803 | 5.678 | 18.194 | 14.852 | 3596033|F|0–14:T > C | TT/CC |
100,735,094/I | SECCE1Rv1G0013110.1 | endoglucanase | exon (7/7) | 8.091 | 8.574 | 7.376 | 9.133 | 3596652|F|0–30:A > G | GG/AA |
108,660,456/I | SECCE1Rv1G0013840.1 | invertase/pectin methylesterase inhibitor family protein | exon (1/1) | 16.272 | 14.424 | 21.278 | 18.861 | 3591362|F|0–11:A > C | AA/CC |
109,130,631/I | SECCE1Rv1G0013960.1 | protein CHUP1 | exon (1/2) | 16.069 | 14.752 | 20.085 | 5.391 | 3345552|F|0–36:A > G | GG/AA |
111,147,729/I | SECCE1Rv1G0014220.1 | NBS-LRR disease resistance protein-like protein | exon (1/1) | 21.381 | 19.596 | 26.171 | 5.160 | 5034809|F|0–32:G > C | CC/GG |
114,605,663/I | SECCE1Rv1G0014450.1 | pathogenesis-related thaumatin family protein | exon (2/2) | 16.633 | 20.705 | 24.255 | 7.960 | 3594357|F|0–29:A > C | CC/AA |
119,156,676/I | SECCE1Rv1G0014990.1 | phenylalanine ammonia-lyase | exon (1/1) | 8.951 | 9.206 | 11.689 | 4.436 | 3587847|F|0–44:C > A | AA/CC |
132,257,012/I | SECCE1Rv1G0015900.1 | receptor-like kinase | exon (1/1) | 4.925 | 4.905 | 12.837 | 10.778 | 3349900|F|0–20:T > C | TT/CC |
132,257,078/I | SECCE1Rv1G0015900.1 | receptor-like kinase | exon (1/1) | 4.114 | 3.070 | 14.791 | 11.324 | 3344187|F|0–12:G > C | CC/GG |
133,009,915/I | SECCE1Rv1G0015990.1 | MYB-related transcription factor | intron (1/2) | 3.480 | 3.508 | 10.719 | 6.893 | 3899895|F|0–56:G > A | AA/GG |
135,177,129/I | SECCE1Rv1G0016170.1 | ring finger protein | exon (1/1) | 4.692 | 4.597 | 13.963 | 5.013 | 75511600|F|0–32:T > G | TT/GG |
140,611,121/I | SECCE1Rv1G0016670.1 | carboxyl-terminal peptidase | exon (5/5) | 5.659 | 6.333 | 9.342 | 8.507 | 5503350|F|0–5:G > A | AA/GG |
140,893,901/I | SECCE1Rv1G0016710.1 | leucine-rich repeat receptor-like protein kinase family | exon (1/1) | 6.821 | 4.463 | 12.039 | 10.634 | 3353307|F|0–11:T > C | CC/TT |
380,571,002/II | SECCE1Rv1G0027270.1 | folylpolyglutamate synthase | intron (2/15) | 5.367 | 5.049 | 8.720 | 8.538 | 3360254|F|0–23:C > T | CC/TT |
404,779,809/II | SECCE1Rv1G0028640.1 | kinase family protein*** | exon (13/13) | 3.091 | 4.214 | 3.855 | 3.364 | 3596868|F|0–24:T > C | CC/TT |