Table 1 List of ten TIP genes identified in tigernut. (AA amino acid, AI aliphatic index, At Arabidopsis thaliana, Scf scaffold, GRAVY grand average of hydropathicity, kDa kilodalton, MIP major intrinsic protein, MW molecular weight, Os Oryza sativa, TIP tonoplast intrinsic protein, TM transmembrane helix, WGD whole-genome duplication)
Gene name | Locus | Position | AA | MW (kDa) | pI | GRAVY | AI | MIP | TM | Ortholog | |
|---|---|---|---|---|---|---|---|---|---|---|---|
Rice | Arabidopsis | ||||||||||
CeTIP1;1 | CESC_05136 | Scf16:2974020.2975745(+) | 251 | 25.75 | 6.01 | 0.831 | 107.77 | 17.233 | 6 | OsTIP1;1 | AtTIP1;1, -1;2 |
CeTIP1;2 | CESC_21713 | Scf31:3827216.3828338(+) | 253 | 26.03 | 5.71 | 0.808 | 109.57 | 14.234 | 6 | OsTIP1;2 | AtTIP1;3 |
CeTIP1;3 | CESC_14421 | Scf2:3957060.3958674(-) | 251 | 25.47 | 7.00 | 0.818 | 107.81 | 15.233 | 6 | - | - |
CeTIP2;1 | CESC_09964 | Scf27:1400602.1401661(+) | 248 | 24.73 | 5.09 | 0.948 | 114.60 | 14.231 | 6 | OsTIP2;2 | AtTIP2;1 |
CeTIP2;2 | CESC_15905 | Scf54:4665053.4666621(-) | 247 | 24.80 | 5.80 | 1.005 | 114.25 | 14.231 | 6 | OsTIP2;1 | AtTIP2;2, -2;3 |
CeTIP2;3 | CESC_04647 | Scf24:3657482.3658632(-) | 251 | 25.33 | 5.46 | 0.944 | 115.90 | 14.232 | 6 | OsTIP2;1 | AtTIP2;2, -2;3 |
CeTIP3;1 | CESC_17492 | Scf16:440841.442643(+) | 255 | 27.12 | 6.75 | 0.639 | 114.16 | 16.233 | 6 | OsTIP3;1, -3;2 | AtTIP3;1, -3;2 |
CeTIP3;2 | CESC_21938 | Scf54:3113942.3114971(+) | 253 | 26.69 | 9.66 | 0.537 | 103.12 | 17.233 | 6 | OsTIP3;1, -3;2 | AtTIP3;1, -3;2 |
CeTIP4;1 | CESC_11872 | Scf40:5230058.5231324(-) | 250 | 25.57 | 6.02 | 0.884 | 119.40 | 12.231 | 6 | OsTIP4;1, -4;2, -4;3 | AtTIP4;1 |
CeTIP5;1 | CESC_15904 | Scf54:4662060.4663490(-) | 262 | 26.82 | 8.43 | 0.708 | 97.63 | 15.235 | 6 | OsTIP5;1 | AtTIP5;1 |