The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell
© Sun et al.; licensee BioMed Central Ltd. 2015
Received: 21 July 2014
Accepted: 6 November 2014
Published: 17 February 2015
Sec18p/N-ethylmaleimide-sensitive factor (NSF) is a conserved eukaryotic ATPase, which primarily functions in vesicle membrane fusion from yeast to human. However, the function of the OsSec18 gene, a homologue of NSF in rice, remains unknown.
In the present study, we investigated the function of OsSec18 in rice and found that OsSec18 complements the temperature-sensitive phenotype and interferes with vacuolar morphogenesis in yeast. Overexpression of OsSec18 in rice decreased the plant height and 1000-grain weight and altered the morphology of the protein bodies. Further examination revealed that OsSec18 presented as a 290-kDa complex in rice endosperm cells. Moreover, Os60sP0 was identified a component of this complex, demonstrating that the OsSec18 complex contains another complex of P0(P1-P2)2 in rice endosperm cells. Furthermore, we determined that the N-terminus of OsSec18 can interact with the N- and C-termini of Os60sP0, whereas the C-terminus of OsSec18 can only interact with the C-terminus of Os60sP0.
Our results revealed that the OsSec18 regulates vacuolar morphology in both yeast and rice endosperm cell and the OsSec18 interacts with P0(P1-P2)2 complex in rice endosperm cell.
Sec18p/N-ethylmaleimide-sensitive factor (NSF) is a conserved ATPase required for vesicle membrane fusion in eukaryotes. In yeast and mammalian cells, the mechanism of vesicle membrane fusion, which is mediated by Sec18p/NSF and the soluble NSF attachment protein (SNAP) receptor (SNARE) complex, has been extensively investigated. NSF assembles with SNAP and SNAREs to form a 20S SNARE fusion complex that mediates membrane fusion between vesicles . This 20S fusion complex is disassembled by NSF via ATP hydrolysis . During this process, Sec18p/NSF, acting as a SNARE chaperone, binds to SNARE complexes, disassembling them and facilitating SNARE recycling by utilizing the energy from ATP hydrolysis. The rate of Sec18p/NSF-mediated disassembly correlates to the SNARE-activated ATPase activity of NSF .
NSF is also involved in protein trafficking [4-7]. Previous studies have indicated that NSF binds directly to the C-terminal tail of the GluR2 subunit of the alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionate (AMPA) receptor in a SNAP-dependent manner to regulate the function of these receptors [6,7]. McDonald et al. have found that NSF can bind to β-arrestin1 and plays a hitherto role in facilitating clathrin coat-mediated internalization of G protein-coupled receptors . Cong et al. have confirmed that NSF can bind to β2 adrenergic receptors (β2-ARs) at the final three amino acids in the C-terminal tail of these receptors, thereby regulating receptor recycling .
To date, very limited information about Sec18p/NSF and SNARE complexes in plants is available. Sato et al. have cloned a homolog of NSF from tobacco, designated as NtNSF-1, which encodes a 739-aa protein that displays ATP binding capacity . Hugueney et al. have investigated a plastid fusion and/or translocation factor (Pftf) in Capsicum annuum and demonstrated that it functions in vesicle fusion in an ATP-dependent manner. However, Pftf, which encodes a 72-kDa protein, was only expressed in leaves and young fruit in red peppers . Bioinformatic analysis indicated that its cDNA sequence displays 53% and 51% homology with yeast Sec18p and mammalian NSF, respectively. However, the functions of OsSec18, a homolog of Sec18p/NSF in rice, remain unknown.
More recently, some studies have indicated that the proteins involved in protein sorting play important roles in plant development. Vacuolar protein sorting 29 (VPS29) is a component of a retromer complex that recycles the vacuolar sorting receptor VPS10 from the pre-vacuolar compartment (PVC) to the Golgi complex. In Arabidopsis, the VPS29 homolog Maigo1 (MAG1)/AtVPS29 is ubiquitously expressed in various organs, including leaves, roots, flowers and developing seeds . The MAG1 mutant (mag1) exhibits a dwarf phenotype, suggesting that it may play a significant role in plant growth and development . Furthermore, VPS29 is involved in endosome homeostasis, PIN protein cycling, and VSR recycling from the PVC to the trans-Golgi network (TGN) during the trafficking of soluble proteins to the lytic vacuole (LV) [13,14]. Moreover, the protein sorting protein 45 (VPS45p), a member of the Sec1p family, is involved in vesicle-mediated protein trafficking in various organelles of the endomembrane system [15,16]. Bassham et al. have found that AtVPS45p co-localized with an epidermal growth factor receptor-like protein (AtELP) in Arabidopsis in the TGN and that AtVPS45p functions in the transport of proteins to the vacuole in plants [15,16]. However, the relevance of OsSec18 and PVC remains to be determined in rice.
Ribosomal acid protein P0 as a component of P0 (P1-P2)2 complex, functioning on protein synthesis as a subunit of 60s ribosomes [17,18]. The C-terminus (199-258aa) of P0 binds to the (P1-P2) small complex , while the N-terminus (44-67aa) of P0 interacts to the RNA molecule after P0(P1-P2)2 complex formed . Mutation of P0 gene affects the ribosome activity and viability of Saccharomyces cerevisiae . Barnard et al. and Kondoh et al. have found that the human ribosomal phosphoprotein P0 may be implicated in human colorectal cancer progression [22,23]. Recently, Chang et al. have found that overexpression of P0 protein might cause oncogenesis in breast and liver tissues by partially inhibiting GCIP-mediated tumor suppression . All these results suggest that P0 protein is important for the protein synthesis as well as other cellular functions, such as oncogenesis [17-19]. Rice Os60sP0 is 60% homologous to human 60sP0 in DNA sequences and 53% homologous in amino acids sequences. When compared with yeast, the homology is 54% and 46%, respectively . However, the functions of P0 (P1-P2)2 complex in rice have not been previously reported.
In the present study, we investigated the function of OsSec18 in rice and found that it can complement the temperature-sensitive phenotype but cannot restore vacuolar morphology in yeast. This result suggests that the OsSec18 gene may perform other unknown functions than in yeast. Overexpression of the OsSec18 gene in rice decreased the plant height and 1000-grain weight, and changed the morphology of the protein bodies. Further studies demonstrated that OsSec18 is a component of a 290-kDa complex in rice endosperm cells. Moreover, Os60sP0 was identified as a component of this complex, revealing that the OsSec18 complex contains another complex of P0(P1-P2)2 in rice endosperm cells. Furthermore, we determined that the N-terminus of OsSec18 interacts with the N- and C-termini of Os60sP0, whereas the C-terminus of OsSec18 interacts only with the C-terminus of Os60sP0. We proposed a molecular model for the interaction between OsSec18 and Os60sP0.
The expression profile of OsSEC18 in rice
Although Sec18 has been extensively studied in yeast and mammals, its functions in plants remain unknown. To investigate the function of Sec18 in rice, we first searched the rice genome database (www.gramene.org). An OsSec18 gene (GenBank No. Os05g0519400) is homologous to SEC18 in yeast. OsSec18 shares 46%, 45%, 75% and 37% homology with tobacco NSF, yeast Sec18p, human NtNSF-1 and Capsicum annuum Pftf, respectively (Additional file 1: Figure S1 and Additional file 2: Figure S2). OsSec18 contains two AAA ATP domains at the C terminus and the middle region of the amino acids sequence, and it displays ATP-binding and nucleotide-binding nucleoside-triphosphatase activity.
Interestingly, we found three isoforms or modifications of OsSec18. OsSec18 displayed the lowest molecular mass in inflorescence and immature seed, followed by mature seed and stem, and the highest mass in leaf. These results indicated that OsSec18 is expressed as distinct isoforms or is modified in a tissue-specific manner, implying that these isoforms or modifications may play distinct roles in different organs or tissues.
OsSec18 does not completely complement the function of vesicle fusion in the yeast sec18 mutant
Yeast complementation assays
Clearly, vesicle fusion was disturbed when OsSec18 was expressed in yeast cells. These results showed that the OsSec18 gene not only restored the ability of sey5186 to grow at 37°C but also interfered with vesicle fusion, thus altering vacuolar morphology in yeast. This result suggests that OsSec18 performs nearly the same growth-related function as Sec18/NSF in yeast, but OsSec18 also interrupts vesicle fusion and vacuolar morphology.
Overexpression of OsSec18 alters the morphology of the protein bodies
Phenotypic analyses of transgenic and wild-type rice
Plant height (cm)
1000-grain weight (g)
OsSec18 is a component of a 290-kDa complex in rice endosperm cells
P0(P1-P2)2 is a component of the OsSec18 complex in vivo
Although Sec18p has been extensively studied in yeast and mammalian cells, its functions in plant vacuolar compartments remain to be determined. In this study, we found that OsSec18 rescued a yeast temperature-sensitive mutant phenotype and affected vacuole morphology by interfering with vesicle fusion when overexpressed in either mutant sey52186 or wild-type sey6120 cells in yeast. Three isoforms of OsSec18 were found in different tissues of rice. Furthermore, our data further indicated that OsSec18 affects the morphology of PSV in rice endosperm cells. Moreover, we identified a 290-kDa complex of OsSec18 in rice endosperm and demonstrated that heterologous complex P0(P1-P2)2 is another component of OsSec18 complex. Our data indicate that OsSec18, along with heterologous complex P0(P1-P2)2, is involved in rice vacuolar morphogenesis.
Recently, Jaillais et al. studied vacuolar protein sorting 29 (VPS29), a single-copy gene in Arabidopsis that is an ortholog of VPS29 in yeast and mammals . They found that not only is the AtVPS29 protein a member of the retromer complex but also is required for endosome homeostasis, PIN protein cycling and dynamic PIN1 repolarization during development. Although the interaction among OsSec18, Os60sP0 and PVC had not been reported previously, several studies indicated that the novel function of VPS genes rather than vacuolar fusion and protein trafficking [13,16] . In our study, we found that Os60sP0 play a novel function of vacuolar morphology than protein synthesis. In general, ribosomal acid protein P0, a component of the P0(P1-P2)2 complex, is a subunit of the 60s ribosomal complex that mediates protein synthesis [17,18]. Previous studies indicated that mutation of the P0 gene affects ribosome activity and cell viability in Saccharomyces cerevisiae . Barnard et al. have found that human ribosomal protein P0 phosphorylation is involved in the progression and biological aggressiveness of human colorectal cancer . Furthermore, Kondoh et al. found that P0 may exert a causal effect on hepatocellular carcinoma (HCC) progression via the translational machinery due to its interaction with eukaryotic elongation factors . Recently, Chang et al. reported that the overexpression of the P0 protein may cause tumorigenesis in breast and liver tissues, which at least partially inhibited GCIP-mediated tumor suppression . Based on our data, we found that OsSec18 interacted with P0(P1-P2)2 to form an OsSec18-P0(P1-P2)2 complex. Serial deletion mutation demonstrated that OsSec18 binds to the Os60sP0p in a head/tail to head manner. Our findings provide insights into the functions of OsSec18 in plant growth, vesicle fusion and vacuolar morphology.
In our study, we found three isoforms of OsSec18 in different tissues, clearly suggesting that each isoform may have a unique function in each tissue. The isoform with the highest molecular mass was expressed in leaves, whereas the vacuole morphology and function are largely different from those of other tissues. In addition, the middle size isoform was found in stems and mature seeds, where the vacuoles are transformed into storage- or transportation-related organelles. The smallest isoform was found in inflorescences and immature seeds, which have highly active sites of protein synthesis and cell division. However, the mechanisms by which these isoforms are formed remain unknown. Several mechanisms could underlie the formation of these isoforms. One possible mechanism is alternative splicing at the transcriptional level; another possible mechanism is post-translational modification such as phosphorylation. Thus, our findings introduce new avenues of investigation into the functions of vacuolar fusion in higher plants. It will be interesting to explore the functions of different isoforms of OsSec18 in rice in future.
In the present study, we found that OsSec18 is a component of a 290-kDa complex in rice endosperm cells, and moreover, Os60sP0 was identified as a component of this complex, revealing that the OsSec18 complex contains another complex of P0(P1-P2)2 in rice endosperm cells. Furthermore, we determined that the N-terminus of OsSec18 interacts with the N- and C-termini of Os60sP0, whereas the C-terminus of OsSec18 interacts only with the C-terminus of Os60sP0. We propose a molecular model for the interaction between OsSec18 and Os60sP0.
The S. cerevisiae sec18 mutant sey5186, carrying the genotype MAT sec18-1 ura3-52 leu2-3, 112 GAL + , and wild-type sey6210, carrying the genotype MAT ura3-52 leu2-3,112 his3-200 trp1-901 lys2-801 suc2-9, were kindly provided by Karl Fu. The OsSec18 cDNA clone was purchased from Japanese NIAS GenBank (Accession No. AK072976). A japonica variety, TP309, was used in all plant experiments. All biological reagents, including enzymes, kits, and biomaterials, are listed in Additional file 3: Table S1.
Genetic complementation assays in yeast
A full-length cDNA of rice Sec18 gene was digested by restriction enzymes, SacI and BamHI, and then inserted into the pYES.2 vector (Invitrogen, Carlsbad, CA, USA) and designated as pOsPMP77. The plasmid was introduced into the sec18p mutant strain Sey5186 and the wild-type strain Sey6210, following standard protocols . The transformant strains were grown at 37°C for 30 hrs. The sample preparation for electron microscopy was performed as described by Yang et al. . The colony phenotypes and cellular microstructures were observed via transmission electron microscopy (FEI Company, Hillsboro, OR, USA).
Plasmid construction and transgenic plant generation
An overexpression vector driven by the CaMV35S promoter was constructed. Briefly, the full-length cDNA encoding OsSec18 (GenBank accession No. J023146P19) was digested using the restriction enzymes BamHI and EcoRI and then inserted into the PKANNIBLE plasmid vector. The resulting plasmid was designated as pOsPMP124. Transgenic plants containing the overexpression plasmids were generated via biolistic bombardment-mediated transformation.
A serum against OsSec18 was prepared by Shanghai ImmunoGen Biological Technology. The sera against Os60sP0p and Os60sP1p were prepared by Nanjing Genscript Company. Briefly, the full-length OsSec18 cDNA was inserted into the pET32a plasmid for fusion with a His tag. The engineered E. coli strain BL21 was incubated at 30°C for 6 hrs after induction using IPTG. After harvesting the cells, crude protein was extracted in phosphate buffered saline (PBS). After clarification via centrifugation at 6000 g at 4°C, the crude protein was purified using a His-tagged affinity column. The full-length OsSec18 was used as the antigen to inoculate rabbits; these antibodies were generated by Shanghai ImmunoGen Biological Technology (Shanghai, China). For the preparation of antibodies against Os60sP0p and Os60sP1p, the appropriate peptides derived from Os60sP0p and Os60sP1p were synthesized and used as antigens for inoculation of rabbits; these antibodies were prepared by Genscript Company (Nanjing, China).
SEC and MADLI-TOF mass spectrometry analyses
Rice immature endosperm was harvested after 10–14 days of pollination. Total soluble protein was extracted using PBS containing 0.1% MG132 and 1% protease inhibitor cocktail (Sigma Aldrich, St. Louis, MO, USA). The crude protein extracts were clarified via centrifugation at 10,000 g at 4°C for 10 min. The total protein was filtered through a 0.8-μm filter (Millipore, Billerica, MA, USA). The protein solution was loaded on a Sepharose 300 column (GE Healthcare, Fairfield, CT, USA) and collected in fractions of 2 mL/tube. The protein fractions were separated via 10% SDS-PAGE and then analyzed via Western blot using the appropriate antisera described above. The corresponding proteins and the appropriate molecular mass markers were separated via SDS-PAGE. The proteins of interest were carefully excised following SDS-PAGE and were washed with buffer I (50% v/v acetonitrile, 100 mM ammonium bicarbonate, pH 8.0) and incubated in buffer II (10 mM DTT in 50 mM ammonium bicarbonate, pH 8.0) at 65°C for 1 h, followed by incubation in buffer III (55 mM iodine ammonium acetate, 50 mM ammonium bicarbonate, pH 8.0) in a dark room for 30 min. Enzymatic hydrolysis was performed using trypsin (Promega, Madison, WI, USA) at 37°C overnight after washing with 10 mM ammonium bicarbonate and acetonitrile. An equal volume of buffer IV (60% v/v acetonitrile, 5% formic acid) was added, and then, the sample was ultrasonicated for 10 min. The supernatant was vacuumed dry, and 3 μL of buffer IV was added to dissolve the protein pellets. The resulting protein fractions were used for MADLI-TOF mass spectrometry analysis. The mass spectra were recorded using an Ettan MALDI-TOF/Pro mass spectrometer (ABI, Carlsbad, CA, USA), and the MS data were analyzed using Scaffold software.
Yeast two-hybrid analysis
A yeast two-hybrid kit was used. Briefly, the full-length and various deletion constructs of the OsSec18 and Os60sP0 genes were inserted into pGBKT7 and pGADT7 (Clontech, Mountain View, CA, USA) according to the manufacturer’s instructions, and the constructed plasmids were transformed into the yeast strain AH109 using the LiAc method . The yeast strains were grown in YPDA media (20 g/L tryptophan, 10 g/L yeast extract, 0.03 g/L adenine, 50 mL 40% glucose, 20 g/L agar, pH 5.8) or SD media (Shanghai Genomics, Shanghai, China) at 30°C or 25°C. The transformants were grown on SD medium lacking leucine and tryptophan, on SD medium lacking leucine, tryptophan and histidine or on SD medium lacking leucine, tryptophan, histidine and adenine. A yeast strain co-transformed with pGBKT7-p53 and pGADT7-T was used as a positive control, and a yeast strain co-transformed with pGBKT7-lam and pGADT7-T was used as a negative control.
Co-IP and Western blot analysis
The crude protein extracts from immature endosperm (approximately 200 mg) was obtained using 2 mL RIPA buffer (PBS containing 0.1% MG132 and 1% protease inhibitor cocktail, Sigma Aldrich, St. Louis, MO, USA) and then centrifuged at 12,000 g for 10 min at 4°C. The crude protein extracts were pre-precipitated using 80 μL of Protein A agarose beads (Beyotime, Shanghai, China) at 4°C for 1 h. The supernatant was collected via brief centrifugation, and antiserum against OsSec18 or Os60sP0p was added to the supernatant and then rotated at 4°C for 2 h. Then, 60 μL of Protein A agarose beads was added to the supernatant, and the samples were rotated again at 4°C for 1 h. The precipitated protein complexes were separated via centrifugation at 12,000 g at 4°C for 2 min and then washed three times with 1 mL of PBS containing 1 mM PMSF. Then, 20 μL of total protein extraction buffer (66 mM Tris–HCl, pH 6.8, 2% SDS, 2% β-ME) was added to dissolve the pellets. The sample was separated via 12% SDS-PAGE, followed by Western blot analysis using antiserum against OsSec18, Os60sP0p or Os60sP1p. RIPA buffer was used as a negative control for this experiment.
The sample preparation and observation for electron microscopy were performed as described by Yang et al. .
We thank Karl Fu for kindly providing the S. cerevisiae Sec18 mutant strain sey5186 and the wild-type strain sey6210. This study was funded by the National Foundation of Sciences (3087496).
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